MZB-WORFLOW: Macrozoobenthos data workflow suite
This documentation introduces and illustrates some examples of the Macrozoobenthos data processing workflow suite (mzb-suite).
The MZB project
- Installation
How to install the project and
mzb-suitepackage on your machine.- Workflow and Models
Introduction to the project technical aspects and the models used.
- Configuration
Explanation fo the configuration file and recommended parameter values.
Examples
- Image segmentation
Example of extracting clips from large images
- Skeletonization unsupervised
Example of extracting body length from organism clips
- Skeletonization: supervised, inference
Example of extracting body length and head width from organism clips
- Classification: inference
Example of automatically identifying taxa from organisms clips
- Classification: finetune
Example of retraining classification model
Processing scripts
- Processing scripts
Detailed explanation for processing functions
- Other scripts
Details of other convenience scripts