Other scripts

Here we briefly overview other convenience scripts provided for facilitate other tasks not directly covered in other parts of the project. Please note these are not wrapped in __main__ functions, and should be run from an interactive session (e.g. Jupyter notebook), and that all path names are hardcoded and should be changed directly in the scripts.

Pre-processing filenames

The script scripts/diverse_preprocessing/preprocess_filenames.py standardises the names of the files in the provided path main_root, by changing capitalization to lowercase and changing spaces to _. It then parses the parent directories names and standardises them in the same way, and removes trailing spaces from filenames. The last step removes all files _mask.jpg that could have been left from previous iterations of the pipeline if output folders were not separated from input folders.

Unzip multi-part archives with Python

It might not always be possible to use a GUI utility to uncompress archives, and commonly images can come in a compressed archive. The script scripts/diverse_preprocessing/unzip_manual_skeletons.py unzips a multi-part archive into a folder, using the library zipfile.